category: Sequence - Database Similarity Search
programs:
blastn - search DNA database using DNA query
blastp - search protein database using protein query
BlastViewer - view and analyze BLAST output
blastx - search protein database using auto-translated DNA query
fasta - Sequence database similarity
fastf - compare mixed peptides to a protein database
fastm - compare ordered peptides (or short DNA sequences) to a protein or DNA database
fasts - compare unordered peptides to a protein database
fastx - Database similarity - allow frameshifts between codons
fasty - Database similarity - Allow frameshifts within codons
map_db - read a FASTA (0), GENBANK flat file (1) PIR/VMS (5) or GCG binary (6) sequence database and produce the offsets necessary for efficient memory mapping
relate - Statistical significance of database similarity
ssearch - Rigorous Smith-Waterman database similarity search
tblastn - search auto-translated DNA database using protein query
tblastx - search auto-translated DNA database using auto-translated DNA query
tfastf - compare mixed peptides to a translated DNA database
tfasts - compare unordered peptides to a translated DNA database
tfastx - compare a protein to a DNA database, calculating similarities with frameshifts
tfasty - compare a protein to a DNA database, calculating similarities with frameshifts